蛋白质分子链的超声速孤立子

在Ｄａｖｙｄｏｖ简谐蛋白质分子链模型的基础上，进行合理的连续近似处理，得到了超声速和亚声速孤立子解，并求得孤立子能量．     

Whey Drying on Porous Carriers

Whey is an undurable product. treated very often as a waste which pollutes the natural environment. Whey which is a valuable source of protein, lactose, vitamins and mineral salts should be utilized completely. The present paper is a proposal of whey drying on porous carriers. It is proved experimentally that the proposed drying method guarantees good product quality.     

CDC15, an essential cell cycle gene in Saccharomyces cerevisiae, encodes a protein kinase domain

The cell division cycle gene CDC15 is essential for the late nuclear division in the yeast Saccharomyces cerevisiae. The amino acid sequence of the 974 amino acids/110 kDa CDC15 gene product, as deduced from the nucleotide sequence, includes an aminoterminal protein kinase domain which contains a primary sequence mosaic showing patterns specific for protein serine/threonine kinases besides those for protein tyrosine kinases. Many protein kinases non-essential for growth are known. CDC15 represents an essential protein kinase like CDC7 and CDC28. A carboxyterminal deletion of 32 amino acids renders the protein inactive.     

Nutritive quality of the alkaloid-poor Washington lupin (Lupinus polyphyllus lindl var SF/TA) as a potential protein crop

Abstract : An alkaloid-poor line of Washington lupin (Lupinus polyphyllus Lindl var SF/TA) was developed in an experiment started in 1982. The nutritive quality (alkaloid content, protein and amino acids, fat and fatty acids. macro- and micronutrients, fibre, sugars) yields, and seed quality of this line were studied. The results show that the total alkaloid content was low and varied in different seeds from 226 μg g^?1 to 366 μg g^?1 of dry matter. The main alkaloid was lupanine, but 16 other alkaloids (including sparteine and gramine) were also present. The var SF/TA cannot yet be used for human nutrition without processing although it would be a valuable protein crop. The results confirm that seeds which look different also vary in chemical composition.     

Effect of different rates of N-fertilizers on nodulation, nodule activities and growth of two field grown cvs. of soybean

The effect of N fertilizers on nodulation, nitrogenase, nitrate reductase activities and growth of two cultivars of soybean, Clark and Crauford was evaluated in a field experiment. KNO₃ or NH₄Cl were applied 27 days after planting at 0,16, 32, 64 and 128 kg N/ha. Nodulation and growth of both cultivars significantly increased when N was applied at low levels whereas specific N₂-ase activity (SNA) slightly and insignificantly increased. Cv Crauford showed a greater positive response than cv. Clark. Higher rates of KNO₃ and NH₄Cl (128 kg N/ha) significantly depressed nodulation and SNA but slightly decreased the plant dry matter. Cv. Crauford was more tolerant to N fertilizers than cv. Clark. The decline in SNA was ascribed to increased nitrate reductase activity (NRA) and higher accumulation of nitrites in nodule cytosol. NRA and nitrate contents in nodules of cv. Clark were greater than that in cv. Crauford. Results showed that NH₄ ⁺ is the preferred N source with occasional increases in nodule number and weight. This study provides an evidence for the nodulation and growth variability of soybean cultivars fertilized with different levels of N. The results also suggest that diminishing NRA could contribute to increased N₂ fixation and the interaction between NO₃ ^– assimilation and N₂ fixation is strongly dependent on the plant cultivar.     

Protein modelling using a chimera reference protein derived from exons

Bovine pancreatic /S-trypsin (PDB ID-code: 1TPO) which is registeredin the Brookhaven Protein Data Bank (PDB) consists of four exons.The results of homology searches for each exon in the PDB showedthat homologous proteins were tonin (PDB ID-code: 1TON), ratmast cell protease (PDB ID-code: 3RP2_A), kaffikrein A (PDBID-code: 2PKA_B) and kallikrein A (2PKA_B) respectively. Thus,for the three-dimensional structure prediction of 1TPO, a chimeraprotein was constructed from the three proteins mentioned aboveand the 3-D structure prediction was performed using this chimerareference protein. The modelled structure of 1TPO was energeticallyoptimized by molecular mechanics and molecular dynamics simulationand was compared with its X-ray crystal structure registeredin the PDB. The root mean square deviations (r.m.s.d.) of mainchain atoms and the neighbouring active site (5 sphere fromHis57, AsplO2 and Serl95) between the modelled structure andthe X-ray structure were 1.66 and 0.94 respectively. Porcinepancreatic elastase (PDB ID-code: 3EST) which is registeredin the PDB was used as the reference protein and the modelledstructure from 3EST was also compared with the X-ray data. Ther.m.s.d. of main chain atoms and that of the active site were2.14 and 1.18 respectively. These results dearly support thepropriety of this method using the chimera reference protein.     

基于加权决策树的蛋白质序列分类算法研究

针对蛋白质序列分类的需求,深入研究了蛋白质序列分类算法。对蛋白质序列的特征属性进行了大量的分析和研究,给出了蛋白质序列特征属性的描述形式。在此基础上设计了一种基于加权决策树的蛋白质序列分类算法,详细阐述了加权决策树的构造过程以及决策树的主要参数计算方法,而且根据蛋白质序列的特征,对决策树进行了改进,给出了加权决策树的实现方法。测试结果表明：设计的蛋白质序列分类算法具有较高的分类精度和较快的执行速度。     

细菌特征分析的革兰氏阴阳性判别算法

自然界中细菌无处不在,细菌的革兰氏阳性和阴性的有效分类对于临床治疗具有重要意义.现有的细菌的革兰氏阴阳性分类主要依赖于革兰氏染色法.这种方法借助细菌细胞壁结构的不同引起的染色性的差异来进行分类,然而涂片的厚薄和脱色时间的掌握制约着革兰氏染色法的准确性,并且实验需要花费一定时间.本文提出一种用计算机智能分析的细菌革兰氏阴阳性判别方法—基于蛋白质序列特征分析的细菌革兰氏阴阳性判别算法GCBPS.该算法首先挖掘出闭合邻接序列模式(FCloConSP)集合并对大量已知阴阳性的细菌蛋白质序列特征进行提取,然后先利用赋参的余弦相似度距离计算方法来衡量待测细菌蛋白质序列与阳性细菌特征集之间的距离来初步判别是否为阳性,再通过去假阴性等处理后得到最终的细菌革兰氏阴阳性判别结果.该算法已在标注的1591条革兰氏阴性菌以及576条革兰阳性菌的标准数据集上进行评估,实验结果表明,判别的平均正确率F1值可达到95.4%.